When I export to fixed layer ePub everything comes out perfect but with reflowable it's a mess. Things are never in the right places. I know this must be something I am doing wrong. I use master pages to create the layout I want for certain pages adding page numbers and graphic elements to enhance the overall look and feel of the books. I do this to create print copies but would like to start creating reflowable epubs for clients as well. Is there a way to make the finished product come out the same as the indesign file in Reflowable format?
I tried to anchor items on the page and doing each page separately with anchoring and it still didn't come out right. What am I doing wrong?
What I get:
What I want it to look like: